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Hypercube, Inc.: Gainesville, FL, 1998. iii + 249 pp.
Figs. and tables. 19 x 23 cm. ISBN 1-896164-30-7. $24.95.
This text provides a thorough and stimulating set of
laboratory exercises in molecular modeling, at an
intermediate level, specifically aimed at users of HyperChem software.
The HyperChem 5 software package has been reviewed
recently in J. Chem. Educ. 1998,
75, 416, where W. F. Coleman and C. R. Arumainayagam describe it as "an outstanding
computational chemistry program".
Mary L. Caffery and Paul A. Dobosh are faculty
members at Clarke College (IA) and Mount Holyoke College
(MA). Diane M. Richardson has been a faculty member and
a project member of an NSF Regional Molecular
Modeling Workshop for College Teachers in Massachusetts, and
U.S. Marketing Manager at Hypercube. She is currently
Scientific Training Manager at Molecular Applications Group
(Palo Alto, CA).
Caffery provides some pertinent reflections on
molecular modeling across the curriculum, in a significant
Foreword to this book. A few brief quotations give the flavor of the
thinking of this experienced faculty member: "Use of
molecular modeling tools should be as pervasive in the
undergraduate chemistry curriculum as a simple
spectrophotometer or pH meter." "All students should be aware that models are
just that- models, not reality." "Connections should be
made between theoretical modeling work and experimental
variables from the lab." "Lessons should enhance critical thinking."
Fifty computational experiments or exercises are
grouped into eight chapters occupying the first 200 pages of the
text. Broad topical areas include building molecules,
molecular properties, molecular orbitals, conformational
analysis, thermodynamics, charge distributions,
spectroscopy, and molecular dynamics. Chapter 9 provides detailed results
for the exercises- roughly a solutions manual. It also
provides suggestions for use of the exercises in various curricular
contexts in chemistry: general, organic, inorganic, physical,
analytical, biochemistry, and instrumental analysis. This indeed
offers a vision of molecular modeling across the curriculum.
This book begins at the beginning but moves rapidly
into intermediate and sometimes advanced material. It is
appropriately optimistic about the importance and significance
of molecular modeling, but it encourages critical thinking
and is certainly not credulous. The book is intended specifically
for use with the HyperChem software package, and it
explores and celebrates most of the areas of strength of this
software. For the most part it utilizes molecular mechanics
together with semiempirical methods. However, ab initio methods
are occasionally explored as well.
Although the book starts at the beginning, a user
would be wise to keep the HyperChem manuals close at hand.
I sampled the exercises extensively, using a 300 MHz
Compaq Deskpro PC with 64 MB memory, running under
Windows NT 4.0. HyperChem 5.1 Professional was the
particular version of the software used. Most of the exercises should
also work satisfactorily on HyperChem 4.5, or even
earlier versions.
Several useful examples of scripts and macros are
provided. These include Hcl scripts, Tcl/tk scripts, and Excel
macros for use with Excel spreadsheets. The macros control
and interact with HyperChem through DDE (dynamic
data exchange). These concrete examples are quite helpful.
However, a user who is anything short of expert will certainly want
(and need) to refer to the HyperChem manuals. The book
should not be expected to replace the manuals, though it
illustrates and supplements them very nicely.
Finally, a few suggestions are offered here. Exercise
10 explores VSEPR (valence shell electron pair repulsion)
theory. One of the molecules included is
ClF3. It is interesting that AM1 fails to optimize to a
T-shaped geometry. It might be useful to recommend ZINDO/1, which does a better job
than AM1 in this case. The book would probably benefit from
an index, though the table of contents is a reasonable
substitute. It would be helpful to post at least two or three scripts
and macros from this book at the Web site where Hypercube
provides free software such as Excel macros and
HyperChem scripts, http://www.hyper.com/support/software/default.htm.
Overall this is a thoroughly admirable book. It will
help a diligent user to gain a considerably deeper
understanding and appreciation of molecular modeling across the
curriculum.
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