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MacMS: A Mass Spectrometer Simulator: Abstract of Issue 9906M
Stephen W. Bigger
Victoria University of Technology, Melbourne, 8001, Australia

Robert A. Craig
School of Chemistry, The University of Melbourne, Parkville, 3052, Australia

Cover
October 1999
Vol. 76 No. 10
p. 1464

Full Text

MacMS is a program for Mac-OS compatible computers that simulates a magnetic sector mass spectrometer (1-4) designed to operate in the mass-to-charge (m/z) ratio range of 1-200 amu. MacMS has two operational modules. The first module (see Figure 1) is called the "Path" module and enables the user to quantitatively examine the trajectory of an ion of given m/z ratio in the electric and magnetic fields of the simulated "instrument". By systematically measuring a series of trajectories of different ions under different electric and magnetic field conditions, the user can determine how the resolution of the "instrument" is affected by these experimentally variable parameters. The user can thus choose suitable instrumental conditions for scanning a given m/z ratio range with good separation between the peaks.

The second module (see Figure 2) is called as the "Spectrometer" module and enables the user to record, under any chosen instrumental conditions, the mass spectrum of (i) the instrumental background, (ii) neon, (iii) methane, or (iv) the parent ion of carbon tetrachloride. Both voltage scanning and magnetic scanning are possible (5). A hard copy of any mass spectrum that has been recorded can also be obtained. MacMS can read ASCII data files containing mass spectral information of compounds other than those that are "built-in" to the simulator. The appropriate format for creating such data files is described in the program documentation.

There are a number of instructional exercises that can be conducted using the mass spectral information contained within the simulator. These are included in the program documentation. For example, the intensities of the 20Ne+, 21Ne+, and 22Ne+ species can be determined from hard copies of mass spectra of neon that are obtained under different instrumental sensitivities. The relative abundances of the three isotopes of neon can thus be calculated and compared with the literature values (6). The simulator also includes adjustable, fixed-value range and gain settings, which can be used to enhance the resolution and sensitivity of the instrument respectively.


Figure 1. The "Path" module of MacMS showing the control panel (upper section) and graphics display region (lower section). The graphics display region incorporates a "data collector", which includes a "Grab" button to collect data and an area where data are displayed.


Figure 2. The "Spectrometer" module of MacMS showing the control panel (upper section) and a graphics display region (lower section). A mass spectrum is produced in the graphics display region upon scanning. A "data collector" similar to that of the "Path" module forms part of the graphics display region.

Hardware and Software Requirements

Literature Cited

  1. Kiser, R. N. Introduction to Mass Spectrometry and its Applications; Prentice-Hall: Englewood Cliffs, N. J., 1965; pp 1-3; pp 32-65.
  2. Johnstone, R. A. W.; Rose, M. E. Mass Spectrometry for Chemists and Biochemists, 2nd ed.; Cambridge University Press: Cambridge, 1996.
  3. Hill, H. C.; Loudon, A. G. Introduction to Mass Spectrometry; 2nd ed.; Heyden: London, 1972; p 5.
  4. Farmer, J. B. In Mass Spectrometry, McDowell, C. A., Ed.; McGraw-Hill: New York, 1963; pp 10-11.
  5. Message, G. M. Practical Aspects of Gas Chromatography-Mass Spectrometry, Wiley: New York, 1984; Chapter 3.
  6. CRC Handbook of Chemistry and Physics, 55th ed.; CRC: Cleveland, 1974.
More Information
*  Citation
Bigger, Stephen W.; Craig, Robert A. J. Chem. Educ. 1999 76 1464.
*  Keywords
Teaching / Learning Aids; Computer Assisted Instruction; Mass Spectrometry
*  History
Created:
Last Updated:
September 6, 1999
June 23, 2005
  Home > JCE Print > Journal of Chemical Education > Issues > 1999  > October


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