A scanning tunneling microscope (STM) investigation of bare graphite and 11-bromoundecanol adsorbed on graphite has been performed in the undergraduate physical chemistry laboratory at Columbia University. In addition to collecting substrate (surface) and adsorbate (molecule) images, students compare their experimental STM topographs with the shapes of the frontier molecular orbitals of a structurally similar brominated alcohol generated using the Spartan computation program. This investigation stresses the use of the STM as a "molecular camera" with which students can visualize large-scale molecular assemblies and identify chemically significant portions of the molecules. Further, it demonstrates an area where theoretical calculations can be coupled with experimental measurements in a unified setting.
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